Single cell model¶
- class arbor.single_cell_model¶
Wrapper for simplified description and execution of single cell models. Only available in the python library. Abstracts away the details of a
domain_decompositionfor simulations of single, stand-alone cable cells. The simulation can not be distributed over several machines.
- run(tfinal, dt)¶
Run the model from time t=
tflinalwith a dt=
- probe(what, where, frequency)¶
Sample a variable on the cell:
what – Name of the variable to record (currently only ‘voltage’).
locationat which to sample the variable.
frequency – The frequency at which to sample [kHz].
Returns a list spike times [ms] after a call to
Returns a list of
traceafter a call to
single_cell_model.run. Each element in the list holds the trace of one of the probes added via
cable_global_propertiesof the model, including the
- class arbor.trace¶
Stores a trace obtained from a probe after running a model.
Name of the variable being recorded. Currently only ‘voltage’.
Sample times [ms]
Sample values [units specific to sample variable]
single_cell_model is used in our tutorials.
The examples illustrate how to construct a
cable_cell and use it to form
single_cell_model; how to add probes; how to run the model; and how to
visualize the results.