Index

Symbols

(all) label (branch branch_id:integer) label (cable branch_id:integer prox:real dist:real) label (distal reg:region) label (distal-interval start:locset extent:real) label (distal-interval start:locset) label (intersect lhs:region rhs:region [...region]) label (join lhs:locset rhs:locset [...locset]) label (join lhs:region rhs:region [...region]) label (location branch:integer pos:real) label (locset name:string) label (nil) label (on-branches pos:double) label (proximal reg:region) label

(proximal-interval start:locset extent:real) label (proximal-interval start:locset) label (radius-ge reg:region radius:real) label (radius-gt reg:region radius:real) label (radius-le reg:region radius:real) label (radius-lt reg:region radius:real) label (region name:string) label (restrict locations:locset reg:region) label (root) label (sum lhs:locset rhs:locset [...locset]) label (tag tag_id:integer) label (terminal} label (uniform reg:region first:int last:int seed:int) label

_

__getitem__() (catalogue method)

A

alloc (arbor.context attribute), [1] append() (arbor.segment_tree method) arb::backend_kind (C++ enum) arb::backend_kind::gpu (C++ enumerator) arb::backend_kind::multicore (C++ enumerator) arb::cell_gid_type (C++ type) arb::cell_kind (C++ enum) arb::cell_kind::benchmark (C++ enumerator) arb::cell_kind::cable (C++ enumerator) arb::cell_kind::lif (C++ enumerator) arb::cell_kind::spike_source (C++ enumerator) arb::cell_lid_type (C++ type) arb::cell_local_size_type (C++ type) arb::cell_member_type (C++ class) arb::cell_member_type::gid (C++ member) arb::cell_member_type::index (C++ member) arb::cell_size_type (C++ type) arb::context (C++ class) arb::distributed_context (C++ class) arb::distributed_context::barrier (C++ function) arb::distributed_context::distributed_context (C++ function), [1], [2] arb::distributed_context::gather (C++ function), [1] arb::distributed_context::id (C++ function) arb::distributed_context::max (C++ function) arb::distributed_context::min (C++ function) arb::distributed_context::name (C++ function) arb::distributed_context::operator= (C++ function) arb::distributed_context::size (C++ function) arb::distributed_context::sum (C++ function) arb::domain_decomposition (C++ class) arb::domain_decomposition::domain_id (C++ member) arb::domain_decomposition::gid_domain (C++ member) arb::domain_decomposition::groups (C++ member) arb::domain_decomposition::num_domains (C++ member) arb::domain_decomposition::num_global_cells (C++ member) arb::domain_decomposition::num_local_cells (C++ member) arb::dry_run_context (C++ class) arb::dry_run_context::dry_run_context_impl (C++ function) arb::dry_run_context::gather (C++ function) arb::dry_run_context::gather_spikes (C++ function) arb::dry_run_context::id (C++ function) arb::dry_run_context::make_dry_run_context (C++ function) arb::dry_run_context::name (C++ function) arb::dry_run_context::num_cells_per_tile_ (C++ member) arb::dry_run_context::num_ranks_ (C++ member) arb::dry_run_context::size (C++ function) arb::group_description (C++ class) arb::group_description::backend (C++ member) arb::group_description::gids (C++ member) arb::group_description::group_description (C++ function) arb::group_description::kind (C++ member) arb::has_gpu (C++ function) arb::has_mpi (C++ function) arb::local_context (C++ class) arb::local_context::local_context (C++ function) arb::make_context (C++ function), [1] arb::make_local_context (C++ function) arb::make_mpi_context (C++ function) arb::mpi_context (C++ class) arb::mpi_context::mpi_context (C++ function) arb::num_ranks (C++ function) arb::num_threads (C++ function) arb::partition_load_balance (C++ function) arb::probe_info (C++ class) arb::probe_info::address (C++ member) arb::probe_info::tag (C++ member) arb::probe_tag (C++ type) arb::proc_allocation (C++ class) arb::proc_allocation::gpu_id (C++ member) arb::proc_allocation::has_gpu (C++ function)

arb::proc_allocation::num_threads (C++ member) arb::proc_allocation::proc_allocation (C++ function), [1] arb::rank (C++ function) arb::recipe (C++ class) arb::recipe::connections_on (C++ function) arb::recipe::event_generators (C++ function) arb::recipe::gap_junctions_on (C++ function) arb::recipe::get_cell_description (C++ function) arb::recipe::get_cell_kind (C++ function) arb::recipe::get_global_properties (C++ function) arb::recipe::get_probes (C++ function) arb::recipe::num_cells (C++ function) arb::recipe::num_gap_junction_sites (C++ function) arb::recipe::num_sources (C++ function) arb::recipe::num_targets (C++ function) arb::simulation (C++ class) arb::simulation::add_sampler (C++ function) arb::simulation::inject_events (C++ function) arb::simulation::num_spikes (C++ function) arb::simulation::remove_all_samplers (C++ function) arb::simulation::remove_sampler (C++ function) arb::simulation::reset (C++ function) arb::simulation::run (C++ function) arb::simulation::set_binning_policy (C++ function) arb::simulation::set_global_spike_callback (C++ function) arb::simulation::set_local_spike_callback (C++ function) arb::simulation::simulation (C++ function) arb::simulation::spike_export_function (C++ type) arb::symmetric_recipe (C++ class) arb::symmetric_recipe::connections_on (C++ function) arb::symmetric_recipe::event_generators (C++ function) arb::symmetric_recipe::tiled_recipe_ (C++ member) arb::tile (C++ class) arb::tile::connections_on (C++ function) arb::tile::event_generators (C++ function) arb::tile::num_tiles (C++ function) arb::util::any_cast (C++ function) arb::util::any_ptr (C++ class) arb::util::any_ptr::as (C++ function) arb::util::unique_any (C++ class) arbenv::default_gpu (C++ function) arbenv::find_private_gpu (C++ function) arbenv::get_env_num_threads (C++ function) arbenv::thread_concurrency (C++ function) arbenv::with_mpi (C++ class) arbenv::with_mpi::with_mpi (C++ function) arbnml::bad_segment (C++ class) arbnml::bad_segment_group (C++ class) arbnml::cyclic_dependency (C++ class) arbnml::morphology_data (C++ class) arbnml::morphology_data::cell_id (C++ member) arbnml::morphology_data::group_segments (C++ member) arbnml::morphology_data::groups (C++ member) arbnml::morphology_data::id (C++ member) arbnml::morphology_data::morphology (C++ member) arbnml::morphology_data::named_segments (C++ member) arbnml::morphology_data::segments (C++ member) arbnml::neuroml (C++ class) arbnml::neuroml::cell_ids (C++ function) arbnml::neuroml::cell_morphology (C++ function) arbnml::neuroml::morphology (C++ function) arbnml::neuroml::morphology_ids (C++ function) arbnml::neuroml::neuroml (C++ function) arbnml::no_document (C++ class) arbnml::parse_error (C++ class) arbnml::with_xml (C++ class) arbnml::xml_error (C++ class) arbor module attach_sampler() (in module arbor), [1] attach_spike_recorder() (in module arbor)

B

backend (arbor.group_description attribute) (class in arbor) benchmark (arbor.cell_kind attribute) benchmark_cell (class in arbor) benchmark_cell.benchmark_cell() (in module arbor) branch (arbor.cable attribute) (arbor.location attribute)

branch_children() (arbor.morphology method) branch_parent() (arbor.morphology method) branch_segments() (arbor.morphology method) built-in function connection.connection()

C

C_m (arbor.lif_cell attribute) cable (arbor.cell_kind attribute) (class in arbor) cable.cable() (in module arbor) cable_cell (class in arbor) cable_cell::paint (C++ function) cable_cell::place (C++ function) cable_cell_global_properties (C++ class) cable_cell_global_properties::add_ion (C++ function), [1] cable_cell_global_properties::catalogue (C++ member) cable_cell_global_properties::coalesce_synapses (C++ member) cable_cell_global_properties::default_parameters (C++ member) cable_cell_global_properties::ion_species (C++ member) cable_cell_global_properties::membrane_voltage_limit_mv (C++ member) cable_cell_local_parameter_set (C++ class) cable_cell_local_parameter_set::axial_resistivity (C++ member) cable_cell_local_parameter_set::discretisation (C++ member) cable_cell_local_parameter_set::init_membrane_potential (C++ member) cable_cell_local_parameter_set::ion_data (C++ member) cable_cell_local_parameter_set::membrane_capacitance (C++ member) cable_cell_local_parameter_set::temperature_K (C++ member) cable_cell_parameter_set (C++ class) cable_cell_parameter_set::reversal_potential_method (C++ member)

cable_probe() (in module arbor) catalogue (built-in class) cell_connection (C++ class) cell_connection::cell_connection_endpoint (C++ type) cell_connection::delay (C++ member) cell_connection::dest (C++ member) cell_connection::source (C++ member) cell_connection::weight (C++ member) cell_kind (class in arbor) cell_member generic cell_member (class in arbor) cell_member.cell_member() (in module arbor) config() (in module arbor) connection (built-in class) connection.connection() built-in function context (class in arbor) context.context() (in module arbor), [1], [2], [3], [4] cpu_group_size (arbor.partition_hint attribute) cv_policy (C++ class) cv_policy::cv_boundary_points (C++ function) cv_policy::domain (C++ function)

D

default (mechanism_field attribute) delay (connection attribute) derive() (catalogue method) dest (connection attribute) dist (arbor.cable attribute) (arbor.segment attribute)

distributed_context_handle (C++ type) domain_decomposition (class in arbor) domain_decomposition.gid_domain() (in module arbor) domain_id (arbor.domain_decomposition attribute) dt (arbor.regular_schedule attribute)

E

E_L (arbor.lif_cell attribute) empty (arbor.morphology attribute) (arbor.segment_tree attribute) event_generator (class in arbor)

event_generator.event_generator() (in module arbor) explicit_schedule (class in arbor) explicit_schedule.events() (in module arbor) explicit_schedule.explicit_schedule() (in module arbor)

F

following (arbor.simulation.binning attribute)

freq (arbor.poisson_schedule attribute)

G

gap_junction_connection (built-in class) (C++ class) gap_junction_connection::ggap (C++ member) gap_junction_connection::local (C++ member) gap_junction_connection::peer (C++ member) generic cell_member gid index integer locset real region string

ggap (gap_junction_connection attribute) gid generic gid (arbor.cell_member attribute) gids (arbor.group_description attribute) globals (mechanism_info attribute) gpu (arbor.backend attribute) gpu_group_size (arbor.partition_hint attribute) gpu_id (arbor.context attribute), [1] (arbor.proc_allocation attribute) group_description (class in arbor) group_description.group_description() (in module arbor) groups (arbor.domain_decomposition attribute)

H

has() (catalogue method) has_gpu (arbor.context attribute) (C++ function)

has_mpi (arbor.context attribute)

I

index generic index (arbor.cell_member attribute) integer generic

ion (class in arbor) ion_dependency (built-in class) ions (mechanism_info attribute) is_derived() (catalogue method)

K

kind (arbor.group_description attribute)

L

label (all) (branch branch_id:integer) (cable branch_id:integer prox:real dist:real) (distal reg:region) (distal-interval start:locset extent:real) (distal-interval start:locset) (intersect lhs:region rhs:region [...region]) (join lhs:locset rhs:locset [...locset]) (join lhs:region rhs:region [...region]) (location branch:integer pos:real) (locset name:string) (nil) (on-branches pos:double) (proximal reg:region) (proximal-interval start:locset extent:real) (proximal-interval start:locset) (radius-ge reg:region radius:real) (radius-gt reg:region radius:real) (radius-le reg:region radius:real) (radius-lt reg:region radius:real) (region name:string) (restrict locations:locset reg:region) (root) (sum lhs:locset rhs:locset [...locset]) (tag tag_id:integer) (terminal} (uniform reg:region first:int last:int seed:int)

lif (arbor.cell_kind attribute) lif_cell (class in arbor) linear (mechanism_info attribute) load_swc() (in module arbor) load_swc_allen() (in module arbor) local (gap_junction_connection attribute) location (class in arbor) location.location() (in module arbor) locset generic

M

max (mechanism_field attribute) max_size (arbor.partition_hint attribute) mechanism (built-in class) mechanism() (mechanism method) mechanism_desc::mechanism_desc (C++ function) mechanism_desc::set (C++ function) mechanism_field (built-in class) mechanism_info (built-in class) meter_manager (class in arbor) meter_manager.checkpoint() (in module arbor) meter_manager.checkpoint_names() (in module arbor) meter_manager.meter_manager() (in module arbor) meter_manager.start() (in module arbor) meter_manager.times() (in module arbor) meter_report (class in arbor)

meter_report.meter_report() (in module arbor) min (mechanism_field attribute) mnpos (in module arbor) module arbor morphology (class in arbor) morphology.morphology() (in module arbor) mpi (arbor.context attribute), [1] mpi_comm (class in arbor) mpi_comm.mpi_comm() (in module arbor), [1] mpi_finalize() (in module arbor) mpi_init() (in module arbor) mpi_is_finalized() (in module arbor) mpi_is_initialized() (in module arbor) mpoint (class in arbor) multicore (arbor.backend attribute)

N

name (mechanism attribute) none (arbor.simulation.binning attribute) num_branches (arbor.morphology attribute)

num_domains (arbor.domain_decomposition attribute) num_global_cells (arbor.domain_decomposition attribute) num_local_cells (arbor.domain_decomposition attribute)

P

paint() (arbor.cable_cell method) parameters (mechanism_info attribute) parents (arbor.segment_tree attribute) partition_hint (class in arbor) partition_hint.partition_hint() (in module arbor) partition_load_balance() (in module arbor) peer (gap_junction_connection attribute) poisson_schedule (class in arbor)

poisson_schedule.events() (in module arbor) poisson_schedule.poisson_schedule() (in module arbor) pos (arbor.location attribute) prefer_gpu (arbor.partition_hint attribute) probe (class in arbor) proc_allocation (class in arbor) proc_allocation.proc_allocation() (in module arbor) prox (arbor.cable attribute) (arbor.segment attribute)

R

radius (arbor.mpoint attribute) rank (arbor.context attribute) ranks (arbor.context attribute) read_rev_pot (ion_dependency attribute) real generic recipe (class in arbor) recipe.cell_description() (in module arbor) recipe.cell_kind() (in module arbor) recipe.connections_on() (in module arbor) recipe.event_generators() (in module arbor)

recipe.gap_junctions_on() (in module arbor) recipe.get_probes() (in module arbor) recipe.num_cells() (in module arbor) recipe.num_gap_junction_sites() (in module arbor) recipe.num_sources() (in module arbor) recipe.num_targets() (in module arbor) region generic regular (arbor.simulation.binning attribute) regular_schedule (class in arbor) regular_schedule.events() (in module arbor) regular_schedule.regular_schedule() (in module arbor)

S

sampler (class in arbor) sampler.sampler() (in module arbor) sampler.samples() (in module arbor) seed (arbor.poisson_schedule attribute) segment (class in arbor) segment_tree (class in arbor) segment_tree.segment_tree() (in module arbor) segments (arbor.segment_tree attribute) set() (mechanism method) set_properties() (arbor.cable_cell method) simulation (class in arbor) simulation.binning (class in arbor) simulation.reset() (in module arbor) simulation.run() (in module arbor) simulation.set_binning_policy() (in module arbor) simulation.simulation() (in module arbor) size (arbor.segment_tree attribute) source (arbor.spike attribute) (connection attribute)

spike (class in arbor) spike.spike() (in module arbor) spike_recorder (class in arbor) spike_recorder.spike_recorder() (in module arbor) spike_source (arbor.cell_kind attribute) spike_source_cell (class in arbor) spike_source_cell.spike_source_cell() (in module arbor) spikes (arbor.spike_recorder attribute) state (mechanism_info attribute) stitched_morphology (C++ class) stitched_morphology::labels (C++ function) stitched_morphology::morphology (C++ function) stitched_morphology::segments (C++ function) stitched_morphology::stitch (C++ function) stitched_morphology::stitched_morphology (C++ function), [1] string generic

T

t_ref (arbor.lif_cell attribute) tag (arbor.segment attribute) target (arbor.event_generator attribute) tau_m (arbor.lif_cell attribute) threads (arbor.context attribute), [1], [2] (arbor.proc_allocation attribute)

time (arbor.spike attribute) (arbor.trace_sample attribute) times (arbor.explicit_schedule attribute) trace_sample (class in arbor) tstart (arbor.poisson_schedule attribute) (arbor.regular_schedule attribute) tstop (arbor.regular_schedule attribute)

U

units (mechanism_field attribute)

V

V_m (arbor.lif_cell attribute) V_reset (arbor.lif_cell attribute)

V_th (arbor.lif_cell attribute) value (arbor.trace_sample attribute) values (mechanism attribute)

W

weight (arbor.event_generator attribute) (connection attribute)

write_ext_con (ion_dependency attribute) write_int_con (ion_dependency attribute) write_rev_pot (ion_dependency attribute)

X

x (arbor.mpoint attribute)

Y

y (arbor.mpoint attribute)

Z

z (arbor.mpoint attribute)