Index

Symbols

(add (iexpr | real) (iexpr | real) [... (iexpr | real)]) label (all) label (arbor-component data:meta-data comp:decor/label-dict/morphology/cable-cell) label (axial-resistivity val:real) label (branch branch_id:integer) label (branch id:int parent_id:int seg:segment [...seg:segment]) label (cable branch_id:integer prox:real dist:real) label (cable-cell morph:morphology dec:decor dict:label-dict) label (current-clamp (envelope-pulse delay:real duration:real amplitude:real) freq:real phase:real) label (current-clamp [...(envelope time:real amplitude:real)] freq:real phase:real) label (decor [...def:paint/place/default]) label (default prop:defaultable) label (density method:mechanism) label (diameter scale:real) label (diameter) label (distal reg:region) label (distal-distance loc:locset) label (distal-distance reg:region) label (distal-distance scale:real loc:locset) label (distal-distance scale:real reg:region) label (distal-interval start:locset extent:real) label (distal-interval start:locset) label (distal-translate ls:locset distance:real) label (distance loc:locset) label (distance reg:region) label (distance scale:real loc:locset) label (distance scale:real reg:region) label (div (iexpr | real) (iexpr | real) [... (iexpr | real)]) label (exp value:(iexpr | real)) label (iexpr-def label:string e:iexpr) label (interpolation prox_value:real prox_loc:locset dist_value:real dist_loc:locset) label (interpolation prox_value:real prox_reg:region dist_value:real dist_reg:region) label (intersect lhs:region rhs:region [...region]) label (ion-external-concentration ion:string val:real) label (ion-internal-concentration ion:string val:real) label (ion-reversal-potential ion:string val:real) label (ion-reversal-potential-method ion:string method:mechanism) label (join lhs:locset rhs:locset [...locset]) label (join lhs:region rhs:region [...region]) label (junction method:mechanism) label (label-dict [...def:region-def/locset-def/iexpr-def]) label (location branch:integer pos:real) label (locset name:string) label (locset-def label:string ls:locset) label (locset-nil) label

(log value:(iexpr | real)) label (mechanism name:string [...(param:string val:real)]) label (membrane-capacitance val:real) label (membrane-potential val:real) label (meta-data v:version) label (morphology [...b:branch]) label (mul (iexpr | real) (iexpr | real) [... (iexpr | real)]) label (on-branches pos:double) label (paint reg:region prop:paintable) label (pi) label (place ls:locset prop:placeable label:string) label (point x:real y:real z:real radius:real) label (proximal reg:region) label (proximal-distance loc:locset) label (proximal-distance reg:region) label (proximal-distance scale:real loc:locset) label (proximal-distance scale:real reg:region) label (proximal-interval start:locset extent:real) label (proximal-interval start:locset) label (proximal-translate ls:locset distance:real) label (radius scale:real) label (radius) label (radius-ge reg:region radius:real) label (radius-gt reg:region radius:real) label (radius-le reg:region radius:real) label (radius-lt reg:region radius:real) label (region name:string) label (region-def label:string reg:region) label (region-nil) label (restrict locations:locset reg:region) label (root) label (scalar value:real) label (scaled-mechanism p:density [...(param:string e:iexpr)]) label (segment id:int prox:point dist:point tag:int) label (segment segment_id:integer) label (step value:(iexpr | real)) label (sub (iexpr | real) (iexpr | real) [... (iexpr | real)]) label (sum lhs:locset rhs:locset [...locset]) label (synapse method:mechanism) label (tag tag_id:integer) label (temperature-kelvin val:real) label (terminal) label (threshold-detector val:real). label (uniform reg:region first:int last:int seed:int) label (version val:string) label

_

__call__() (arbor.isometry method) __contains__() (catalogue method) __getitem__() (catalogue method)

__init__() (arbor.cable_cell method) (arbor.decor method) (catalogue method) __iter___() (catalogue method)

A

action potential all (arbor.spike_recording attribute) all_at() (arbor.place_pwlin method) all_segments() (arbor.place_pwlin method) append() (arbor.segment_tree method) apply (C++ function) apply_isometry() (arbor.segment_tree method) arb::backend_kind (C++ enum) arb::backend_kind::gpu (C++ enumerator) arb::backend_kind::multicore (C++ enumerator) arb::cell_connection (C++ class) arb::cell_connection::delay (C++ member) arb::cell_connection::dest (C++ member) arb::cell_connection::source (C++ member) arb::cell_connection::weight (C++ member) arb::cell_gid_type (C++ type) arb::cell_global_label_type (C++ class) arb::cell_global_label_type::gid (C++ member) arb::cell_global_label_type::label (C++ member) arb::cell_kind (C++ enum) arb::cell_kind::benchmark (C++ enumerator) arb::cell_kind::cable (C++ enumerator) arb::cell_kind::lif (C++ enumerator) arb::cell_kind::spike_source (C++ enumerator) arb::cell_lid_type (C++ type) arb::cell_local_label_type (C++ class) arb::cell_local_label_type::policy (C++ member) arb::cell_local_label_type::tag (C++ member) arb::cell_local_size_type (C++ type) arb::cell_member_type (C++ class) arb::cell_member_type::gid (C++ member) arb::cell_member_type::index (C++ member) arb::cell_size_type (C++ type) arb::cell_tag_type (C++ type) arb::context (C++ class) arb::distributed_context (C++ class) arb::distributed_context::barrier (C++ function) arb::distributed_context::distributed_context (C++ function), [1], [2] arb::distributed_context::gather (C++ function), [1] arb::distributed_context::id (C++ function) arb::distributed_context::max (C++ function) arb::distributed_context::min (C++ function) arb::distributed_context::name (C++ function) arb::distributed_context::operator= (C++ function) arb::distributed_context::size (C++ function) arb::distributed_context::sum (C++ function) arb::distributed_context_handle (C++ type) arb::domain_decomposition (C++ class) arb::domain_decomposition::domain_decomposition (C++ function) arb::domain_decomposition::domain_id (C++ member) arb::domain_decomposition::gid_domain (C++ member) arb::domain_decomposition::group (C++ member) arb::domain_decomposition::groups (C++ member) arb::domain_decomposition::num_domains (C++ member) arb::domain_decomposition::num_global_cells (C++ member) arb::domain_decomposition::num_groups (C++ member) arb::domain_decomposition::num_local_cells (C++ member) arb::dry_run_context (C++ class) arb::dry_run_context::dry_run_context_impl (C++ function) arb::dry_run_context::gather (C++ function) arb::dry_run_context::gather_spikes (C++ function) arb::dry_run_context::id (C++ function) arb::dry_run_context::make_dry_run_context (C++ function) arb::dry_run_context::name (C++ function) arb::dry_run_context::num_cells_per_tile_ (C++ member) arb::dry_run_context::num_ranks_ (C++ member) arb::dry_run_context::size (C++ function) arb::gap_junction_connection (C++ class) arb::gap_junction_connection::local (C++ member) arb::gap_junction_connection::peer (C++ member) arb::gap_junction_connection::weight (C++ member) arb::group_description (C++ class) arb::group_description::backend (C++ member) arb::group_description::gids (C++ member) arb::group_description::group_description (C++ function) arb::group_description::kind (C++ member) arb::has_gpu (C++ function) arb::has_mpi (C++ function) arb::lid_selection_policy (C++ enum) arb::lid_selection_policy::assert_univalent (C++ enumerator) arb::lid_selection_policy::round_robin (C++ enumerator) arb::lid_selection_policy::round_robin_halt (C++ enumerator) arb::lif_cell (C++ class) arb::lif_cell::C_m (C++ member) arb::lif_cell::E_L (C++ member) arb::lif_cell::E_R (C++ member) arb::lif_cell::lif_cell (C++ function) arb::lif_cell::source (C++ member) arb::lif_cell::t_ref (C++ member) arb::lif_cell::target (C++ member) arb::lif_cell::tau_m (C++ member) arb::lif_cell::V_m (C++ member) arb::lif_cell::V_th (C++ member) arb::local_context (C++ class) arb::local_context::local_context (C++ function) arb::make_context (C++ function), [1] arb::make_local_context (C++ function) arb::make_mpi_context (C++ function) arb::mpi_context (C++ class) arb::mpi_context::mpi_context (C++ function) arb::num_ranks (C++ function) arb::num_threads (C++ function) arb::partition_load_balance (C++ function) arb::probe_info (C++ class) arb::probe_info::address (C++ member) arb::probe_info::tag (C++ member) arb::probe_tag (C++ type) arb::proc_allocation (C++ class) arb::proc_allocation::gpu_id (C++ member) arb::proc_allocation::has_gpu (C++ function) arb::proc_allocation::num_threads (C++ member) arb::proc_allocation::proc_allocation (C++ function), [1] arb::rank (C++ function) arb::recipe (C++ class) arb::recipe::connections_on (C++ function) arb::recipe::event_generators (C++ function) arb::recipe::gap_junctions_on (C++ function) arb::recipe::get_cell_description (C++ function) arb::recipe::get_cell_kind (C++ function) arb::recipe::get_global_properties (C++ function) arb::recipe::get_probes (C++ function) arb::recipe::num_cells (C++ function) arb::simulation (C++ class) arb::simulation::add_sampler (C++ function) arb::simulation::create (C++ function) arb::simulation::inject_events (C++ function) arb::simulation::num_spikes (C++ function) arb::simulation::remove_all_samplers (C++ function) arb::simulation::remove_sampler (C++ function) arb::simulation::reset (C++ function) arb::simulation::run (C++ function) arb::simulation::set_binning_policy (C++ function) arb::simulation::set_global_spike_callback (C++ function)

arb::simulation::set_local_spike_callback (C++ function) arb::simulation::simulation (C++ function) arb::simulation::spike_export_function (C++ type) arb::symmetric_recipe (C++ class) arb::symmetric_recipe::connections_on (C++ function) arb::symmetric_recipe::event_generators (C++ function) arb::symmetric_recipe::tiled_recipe_ (C++ member) arb::tile (C++ class) arb::tile::connections_on (C++ function) arb::tile::event_generators (C++ function) arb::tile::num_tiles (C++ function) arb::util::any_cast (C++ function) arb::util::any_ptr (C++ class) arb::util::any_ptr::as (C++ function) arb::util::unique_any (C++ class) arb_deliverable_event (C struct) arb_deliverable_event.mech_id (C member) arb_deliverable_event.mech_index (C member) arb_deliverable_event.weight (C member) arb_deliverable_event_stream (C struct) arb_deliverable_event_stream.begin (C member) arb_deliverable_event_stream.end (C member) arb_deliverable_event_stream.events (C member) arb_deliverable_event_stream.n_streams (C member) arb_field_info (C struct) arb_field_info.default_value (C member) arb_field_info.name (C member) arb_field_info.range_high (C member) arb_field_info.range_low (C member) arb_field_info.unit (C member) arb_ion_info (C struct) arb_ion_info.expected_valence (C member) arb_ion_info.name (C member) arb_ion_info.read_rev_potential (C member) arb_ion_info.read_valence (C member) arb_ion_info.verify_valence (C member) arb_ion_info.write_ext_concentration (C member) arb_ion_info.write_int_concentration (C member) arb_ion_info.write_rev_potential (C member) ARB_LIBNAME_API (C macro) arb_mechanism (C struct) arb_mechanism.i_cpu (C member) arb_mechanism.i_gpu (C member) arb_mechanism.type (C member) arb_mechanism_interface (C struct) arb_mechanism_interface.advance_state (C member) arb_mechanism_interface.apply_events (C member) arb_mechanism_interface.backend (C member) arb_mechanism_interface.compute_currents (C member) arb_mechanism_interface.init_mechanism (C member) arb_mechanism_interface.partition_width (C member) arb_mechanism_interface.post_event (C member) arb_mechanism_interface.write_ions (C member) arb_mechanism_method (C type) arb_mechanism_ppack (C struct) arb_mechanism_ppack.diam_um (C member) arb_mechanism_ppack.events (C member) arb_mechanism_ppack.globals (C member) arb_mechanism_ppack.index_constraints (C member) arb_mechanism_ppack.ion_states (C member) arb_mechanism_ppack.mechanism_id (C member) arb_mechanism_ppack.multiplicity (C member) arb_mechanism_ppack.n_detectors (C member) arb_mechanism_ppack.node_index (C member) arb_mechanism_ppack.parameters (C member) arb_mechanism_ppack.peer_index (C member) arb_mechanism_ppack.state_vars (C member) arb_mechanism_ppack.temperature_degC (C member) arb_mechanism_ppack.time_since_spike (C member) arb_mechanism_ppack.vec_ci (C member) arb_mechanism_ppack.vec_di (C member) arb_mechanism_ppack.vec_dt (C member) arb_mechanism_ppack.vec_g (C member) arb_mechanism_ppack.vec_i (C member) arb_mechanism_ppack.vec_v (C member) arb_mechanism_ppack.weight (C member) arb_mechanism_ppack.width (C member) arb_mechanism_type (C struct) arb_mechanism_type.abi_version (C member) arb_mechanism_type.fingerprint (C member) arb_mechanism_type.globals (C member) arb_mechanism_type.has_post_events (C member) arb_mechanism_type.ions (C member) arb_mechanism_type.is_linear (C member) arb_mechanism_type.kind (C member) arb_mechanism_type.n_globals (C member) arb_mechanism_type.n_ions (C member) arb_mechanism_type.n_parameters (C member) arb_mechanism_type.n_state_vars (C member) arb_mechanism_type.name (C member) arb_mechanism_type.parameters (C member) arb_mechanism_type.state_vars (C member) ARB_SYMBOL_VISIBLE (C macro) arbenv::default_allocation (C++ function) arbenv::default_concurrency (C++ function) arbenv::default_gpu (C++ function) arbenv::find_private_gpu (C++ function) arbenv::get_affinity (C++ function) arbenv::get_env_num_threads (C++ function) arbenv::thread_concurrency (C++ function) arbenv::with_mpi (C++ class) arbenv::with_mpi::with_mpi (C++ function) arbor module arborio::neuroml (C++ class) arborio::neuroml::cell_ids (C++ function) arborio::neuroml::cell_morphology (C++ function) arborio::neuroml::morphology (C++ function) arborio::neuroml::morphology_ids (C++ function) arborio::neuroml::neuroml (C++ function) arborio::neuroml_options::value (C++ enum) arborio::neuroml_options::value::allow_spherical_root (C++ enumerator) arborio::neuroml_options::value::none (C++ enumerator) arborio::nml_bad_segment (C++ class) arborio::nml_bad_segment_group (C++ class) arborio::nml_cyclic_dependency (C++ class) arborio::nml_morphology_data (C++ class) arborio::nml_morphology_data::cell_id (C++ member) arborio::nml_morphology_data::group_segments (C++ member) arborio::nml_morphology_data::groups (C++ member) arborio::nml_morphology_data::id (C++ member) arborio::nml_morphology_data::morphology (C++ member) arborio::nml_morphology_data::named_segments (C++ member) arborio::nml_morphology_data::segments (C++ member) arborio::nml_no_document (C++ class) arborio::nml_parse_error (C++ class) arborio::with_xml (C++ class) asc_morphology (C++ class) (class in arbor) asc_morphology::labels (C++ member) asc_morphology::morphology (C++ member) at() (arbor.place_pwlin method) axial_resisitivity (arbor.cable_cell_global_properties property)

B

backend (arbor.group_description attribute) (class in arbor) benchmark (arbor.cell_kind attribute) benchmark_cell (class in arbor) benchmark_cell.benchmark_cell() (in module arbor) binning (class in arbor)

branch (arbor.cable attribute) (arbor.location attribute) branch_children() (arbor.morphology method) branch_parent() (arbor.morphology method) branch_segments() (arbor.morphology method)

C

C_m (arbor.lif_cell attribute) cable (arbor.cell_kind attribute) (class in arbor) cable.cable() (in module arbor) cable_cell (class in arbor) cable_cell_component (C++ class) (class in arbor) cable_cell_component::component (C++ member) cable_cell_component::meta (C++ member) cable_cell_global_properties (C++ class) (class in arbor) cable_cell_global_properties.unset_ion() (in module arbor) cable_cell_global_properties::add_ion (C++ function), [1] cable_cell_global_properties::catalogue (C++ member) cable_cell_global_properties::coalesce_synapses (C++ member) cable_cell_global_properties::default_parameters (C++ member) cable_cell_global_properties::ion_species (C++ member) cable_cell_global_properties::membrane_voltage_limit_mv (C++ member) cable_cell_local_parameter_set (C++ class) cable_cell_local_parameter_set::axial_resistivity (C++ member) cable_cell_local_parameter_set::discretisation (C++ member) cable_cell_local_parameter_set::init_membrane_potential (C++ member) cable_cell_local_parameter_set::ion_data (C++ member) cable_cell_local_parameter_set::membrane_capacitance (C++ member) cable_cell_local_parameter_set::temperature_K (C++ member) cable_cell_parameter_set (C++ class) cable_cell_parameter_set::reversal_potential_method (C++ member) cable_cell_variant (C++ type) cable_probe_axial_current() (in module arbor) cable_probe_density_state() (in module arbor) cable_probe_density_state_cell() (in module arbor) cable_probe_ion_current_cell() (in module arbor) cable_probe_ion_current_density() (in module arbor) cable_probe_ion_ext_concentration() (in module arbor) cable_probe_ion_ext_concentration_cell() (in module arbor) cable_probe_ion_int_concentration() (in module arbor) cable_probe_ion_int_concentration_cell() (in module arbor) cable_probe_membrane_voltage() (in module arbor) cable_probe_membrane_voltage_cell() (in module arbor) cable_probe_point_state() (in module arbor) cable_probe_point_state_cell() (in module arbor) cable_probe_stimulus_current_cell() (in module arbor) cable_probe_total_current_cell() (in module arbor) cable_probe_total_ion_current_cell() (in module arbor) cable_probe_total_ion_current_density() (in module arbor)

cables() (arbor.cell_cv_data method) catalogue (arbor.cable_cell_global_properties property) (arbor.single_cell_model attribute) (built-in class) cell_cv_data (C++ class) (class in arbor) cell_cv_data::cables (C++ function) cell_cv_data::children (C++ function) cell_cv_data::parent (C++ function) cell_cv_data::size (C++ function) cell_global_label (class in arbor) cell_group cell_id (arbor.neuroml_morph_data attribute) cell_ids() (arbor.neuroml method) cell_kind (class in arbor) cell_local_label (class in arbor) cell_member (class in arbor) cell_member.cell_member() (in module arbor) cell_morphology() (arbor.neuroml method) child children() (arbor.cell_cv_data method) closest() (arbor.place_pwlin method) compartment component (arbor.cable_cell_component attribute) config() (in module arbor) connection, [1] (class in arbor) connection.connection() (in module arbor) context (class in arbor) context() (arbor.context method) control volume cpu_group_size (arbor.partition_hint attribute) CV policy cv_data (C++ function) cv_data() (in module arbor) cv_policy (C++ class) (class in arbor) cv_policy::cv_boundary_points (C++ function) cv_policy::domain (C++ function) cv_policy_every_segment() (in module arbor) cv_policy_explicit() (in module arbor) cv_policy_fixed_per_branch() (in module arbor) cv_policy_max_extent() (in module arbor) cv_policy_single() (in module arbor) cv_proportion (C++ class) cv_proportion::idx (C++ member) cv_proportion::proportion (C++ member)

D

decor (class in arbor) decor::paint (C++ function) decor::place (C++ function), [1] default (mechanism_field attribute) defaults() (arbor.decor method) delay (arbor.connection attribute) density (built-in class) density() (density method) density::density (C++ function), [1] derive() (catalogue method)

dest (arbor.connection attribute) discretization() (arbor.decor method) dist (arbor.cable attribute) (arbor.segment attribute) domain (arbor.cv_policy attribute) domain_decomposition (class in arbor) domain_decomposition.gid_domain() (in module arbor) domain_id (arbor.domain_decomposition attribute) dt (arbor.regular_schedule attribute)

E

E_L (arbor.lif_cell attribute) E_R (arbor.lif_cell attribute) empty (arbor.morphology attribute) (arbor.segment_tree attribute) equivalent (C++ function) equivalent() (arbor.segment_tree method) event

event generator event_generator (class in arbor) event_generator.event_generator() (in module arbor) exact (arbor.sampling_policy attribute) explicit_schedule (class in arbor) explicit_schedule.events() (in module arbor) explicit_schedule.explicit_schedule() (in module arbor) extend() (catalogue method)

F

find_private_gpu() (in module arbor) following (arbor.binning attribute)

fork freq (arbor.poisson_schedule attribute)

G

gap junction connection gap_junction_connection (class in arbor) generic gid global_label integer local_label locset real region selection_policy string tag gid generic

gid (arbor.cell_global_label attribute) (arbor.cell_member attribute) gids (arbor.group_description attribute) global_label generic globals (mechanism_info attribute) gpu (arbor.backend attribute) gpu_group_size (arbor.partition_hint attribute) gpu_id (arbor.proc_allocation attribute) group_description (class in arbor) group_description.group_description() (in module arbor) group_segments (arbor.neuroml_morph_data attribute) groups (arbor.domain_decomposition attribute) groups() (arbor.neuroml_morph_data method)

H

handle has_gpu (arbor.context attribute)

has_gpu() (arbor.proc_allocation method) has_mpi (arbor.context attribute)

I

id (arbor.neuroml_morph_data attribute) iexpr index (arbor.cell_member attribute) integer generic intersect_region (C++ function) intersect_region() (in module arbor) ion (class in arbor) ion_data (arbor.cable_cell_global_properties property) ion_dependency (built-in class) ion_reversal_potential (arbor.cable_cell_global_properties property)

ion_valence (arbor.cable_cell_global_properties property) ions (arbor.cable_cell_global_properties property) (mechanism_info attribute) is_derived() (catalogue method) isometry (C++ class) (class in arbor) isometry.__mul__() (in module arbor) isometry::apply (C++ function) isometry::isometry (C++ function) isometry::rotate (C++ function) isometry::translate (C++ function), [1], [2]

J

join_at (C++ function) join_at() (arbor.segment_tree method)

junction (built-in class) junction() (junction method) junction::junction (C++ function), [1]

K

kind (arbor.group_description attribute) (mechanism_info attribute)

L

label (add (iexpr | real) (iexpr | real) [... (iexpr | real)]) (all) (arbor-component data:meta-data comp:decor/label-dict/morphology/cable-cell) (axial-resistivity val:real) (branch branch_id:integer) (branch id:int parent_id:int seg:segment [...seg:segment]) (cable branch_id:integer prox:real dist:real) (cable-cell morph:morphology dec:decor dict:label-dict) (current-clamp (envelope-pulse delay:real duration:real amplitude:real) freq:real phase:real) (current-clamp [...(envelope time:real amplitude:real)] freq:real phase:real) (decor [...def:paint/place/default]) (default prop:defaultable) (density method:mechanism) (diameter scale:real) (diameter) (distal reg:region) (distal-distance loc:locset) (distal-distance reg:region) (distal-distance scale:real loc:locset) (distal-distance scale:real reg:region) (distal-interval start:locset extent:real) (distal-interval start:locset) (distal-translate ls:locset distance:real) (distance loc:locset) (distance reg:region) (distance scale:real loc:locset) (distance scale:real reg:region) (div (iexpr | real) (iexpr | real) [... (iexpr | real)]) (exp value:(iexpr | real)) (iexpr-def label:string e:iexpr) (interpolation prox_value:real prox_loc:locset dist_value:real dist_loc:locset) (interpolation prox_value:real prox_reg:region dist_value:real dist_reg:region) (intersect lhs:region rhs:region [...region]) (ion-external-concentration ion:string val:real) (ion-internal-concentration ion:string val:real) (ion-reversal-potential ion:string val:real) (ion-reversal-potential-method ion:string method:mechanism) (join lhs:locset rhs:locset [...locset]) (join lhs:region rhs:region [...region]) (junction method:mechanism) (label-dict [...def:region-def/locset-def/iexpr-def]) (location branch:integer pos:real) (locset name:string) (locset-def label:string ls:locset) (locset-nil) (log value:(iexpr | real)) (mechanism name:string [...(param:string val:real)]) (membrane-capacitance val:real) (membrane-potential val:real) (meta-data v:version) (morphology [...b:branch]) (mul (iexpr | real) (iexpr | real) [... (iexpr | real)]) (on-branches pos:double) (paint reg:region prop:paintable) (pi) (place ls:locset prop:placeable label:string) (point x:real y:real z:real radius:real) (proximal reg:region) (proximal-distance loc:locset) (proximal-distance reg:region) (proximal-distance scale:real loc:locset) (proximal-distance scale:real reg:region) (proximal-interval start:locset extent:real) (proximal-interval start:locset) (proximal-translate ls:locset distance:real) (radius scale:real) (radius) (radius-ge reg:region radius:real) (radius-gt reg:region radius:real) (radius-le reg:region radius:real) (radius-lt reg:region radius:real) (region name:string) (region-def label:string reg:region) (region-nil) (restrict locations:locset reg:region) (root) (scalar value:real) (scaled-mechanism p:density [...(param:string e:iexpr)]) (segment id:int prox:point dist:point tag:int) (segment segment_id:integer) (step value:(iexpr | real)) (sub (iexpr | real) (iexpr | real) [... (iexpr | real)]) (sum lhs:locset rhs:locset [...locset]) (synapse method:mechanism) (tag tag_id:integer) (temperature-kelvin val:real) (terminal) (threshold-detector val:real). (uniform reg:region first:int last:int seed:int) (version val:string)

label (arbor.cell_global_label attribute) label dictionary label_dict (class in arbor) label_dict() (arbor.label_dict method) labels (arbor.asc_morphology attribute) lax (arbor.sampling_policy attribute) lif (arbor.cell_kind attribute) lif_cell (class in arbor) lif_cell.lif_cell() (in module arbor) lif_probe_voltage() (in module arbor) linear (mechanism_info attribute) load_asc (C++ function) load_asc() (in module arbor) load_component() (in module arbor) load_swc_arbor (C++ function) load_swc_arbor() (in module arbor) load_swc_neuron (C++ function) load_swc_neuron() (in module arbor) loc (arbor.trace attribute) local (arbor.gap_junction_connection attribute) (arbor.spike_recording attribute) local_label generic location (class in arbor) location.location() (in module arbor) locset generic locsets (arbor.label_dict attribute)

M

max (mechanism_field attribute) max_size (arbor.partition_hint attribute) mcable mech (density attribute) (junction attribute) (synapse attribute) mechanism (built-in class) mechanism() (mechanism method) mechanism_desc::mechanism_desc (C++ function) mechanism_desc::set (C++ function) mechanism_field (built-in class) mechanism_info (built-in class) membrane_capacitance (arbor.cable_cell_global_properties property) membrane_potential (arbor.cable_cell_global_properties property) membrane_voltage_limit (arbor.cable_cell_global_properties property) meta_data (C++ class) (class in arbor) meta_data::version (C++ member) metadata meter_manager (class in arbor) meter_manager.checkpoint() (in module arbor) meter_manager.checkpoint_names() (in module arbor) meter_manager.meter_manager() (in module arbor) meter_manager.start() (in module arbor)

meter_manager.times() (in module arbor) meter_report (class in arbor) meter_report.meter_report() (in module arbor) min (mechanism_field attribute) mlocation mnpos (in module arbor) module arbor morphology (arbor.asc_morphology attribute) (arbor.neuroml_morph_data attribute) (class in arbor) morphology() (arbor.neuroml method) morphology.morphology() (in module arbor) morphology_ids() (arbor.neuroml method) mpi_comm (class in arbor) mpi_comm() (arbor.mpi_comm method) mpi_finalize() (in module arbor) mpi_init() (in module arbor) mpi_is_finalized() (in module arbor) mpi_is_initialized() (in module arbor) mpoint (class in arbor) msegment multicore (arbor.backend attribute)

N

name (mechanism attribute) named_segments() (arbor.neuroml_morph_data method) neuroml (class in arbor) neuroml() (arbor.neuroml method) neuroml_morph_data (class in arbor)

none (arbor.binning attribute) num_branches (arbor.morphology attribute) num_domains (arbor.domain_decomposition attribute) num_global_cells (arbor.domain_decomposition attribute) num_groups (arbor.domain_decomposition attribute) num_local_cells (arbor.domain_decomposition attribute)

O

off (arbor.spike_recording attribute)

operator* (C++ function)

P

paint() (arbor.decor method) paintings() (arbor.decor method) parameters (mechanism_info attribute) parent parent() (arbor.cell_cv_data method) parents (arbor.segment_tree attribute) parse_component (C++ function), [1] parse_hopefully (C++ type) parse_swc (C++ function) partition_by_group() (in module arbor) partition_hint (class in arbor) partition_hint.partition_hint() (in module arbor) partition_load_balance() (in module arbor) peer (arbor.gap_junction_connection attribute) place_pwlin (C++ class) (class in arbor) place_pwlin.place_pwlin() (in module arbor) place_pwlin::all_at (C++ function) place_pwlin::all_segments (C++ function) place_pwlin::at (C++ function) place_pwlin::closest (C++ function)

place_pwlin::place_pwlin (C++ function) place_pwlin::segments (C++ function) placed_lid_range() (arbor.cable_cell method) placements() (arbor.decor method) point poisson_schedule (class in arbor) poisson_schedule.events() (in module arbor) poisson_schedule.poisson_schedule() (in module arbor) pos (arbor.location attribute) post_events (mechanism_info attribute) prefer_gpu (arbor.partition_hint attribute) probe (class in arbor) probe() (arbor.single_cell_model method) probeset probeset address probeset id proc_allocation (class in arbor) proc_allocation() (arbor.proc_allocation method) properties (arbor.single_cell_model attribute) prox (arbor.cable attribute) (arbor.segment attribute)

R

radius (arbor.mpoint attribute) rank (arbor.context attribute) ranks (arbor.context attribute) read_rev_pot (ion_dependency attribute) real generic recipe (class in arbor) recipe.cell_description() (in module arbor) recipe.cell_kind() (in module arbor) recipe.connections_on() (in module arbor) recipe.event_generators() (in module arbor) recipe.gap_junctions_on() (in module arbor) recipe.global_properties() (in module arbor) recipe.num_cells() (in module arbor)

recipe.probes() (in module arbor) recording region generic regions (arbor.label_dict attribute) regular (arbor.binning attribute) regular_schedule (class in arbor) regular_schedule.events() (in module arbor) regular_schedule.regular_schedule() (in module arbor) root rotate() (arbor.isometry static method) round_robin (arbor.selection_policy attribute) round_robin_halt (arbor.selection_policy attribute) run() (arbor.single_cell_model method)

S

sample sample_recorder sampler sampling_policy (class in arbor) schedule seed (arbor.poisson_schedule attribute) segment (class in arbor) segment tree segment_tree (arbor.asc_morphology attribute) (C++ class) (class in arbor) segment_tree.segment_tree() (in module arbor) segment_tree::append (C++ function), [1] segment_tree::empty (C++ function) segment_tree::parents (C++ function) segment_tree::segment_tree (C++ function) segment_tree::segments (C++ function) segment_tree::size (C++ function) segments (arbor.segment_tree attribute) segments() (arbor.neuroml_morph_data method) (arbor.place_pwlin method) selection_policy generic selection_policy (arbor.cell_local_label attribute) (class in arbor) set() (mechanism method) set_ion() (arbor.decor method) set_property() (arbor.decor method) simulation (class in arbor) simulation.clear_samplers() (in module arbor) simulation.probe_metadata() (in module arbor) simulation.progress_banner() (in module arbor) simulation.record() (in module arbor) simulation.remove_all_samplers() (in module arbor) simulation.remove_sampler() (in module arbor) simulation.reset() (in module arbor) simulation.run() (in module arbor) simulation.sample() (in module arbor) simulation.samples() (in module arbor)

simulation.set_binning_policy() (in module arbor) simulation.simulation() (in module arbor) simulation.spikes() (in module arbor) simulation.update_connections() (in module arbor) single_cell_model (class in arbor) single_cell_model() (arbor.single_cell_model method) size (arbor.segment_tree attribute) source (arbor.connection attribute) (arbor.lif_cell attribute) spike spike source cell spike_recording (class in arbor) spike_source (arbor.cell_kind attribute) spike_source_cell (class in arbor) spike_source_cell.spike_source_cell() (in module arbor) spikes() (arbor.single_cell_model method) split_at (C++ function) split_at() (arbor.segment_tree method) state (mechanism_info attribute) stitched_morphology (C++ class) stitched_morphology::labels (C++ function) stitched_morphology::morphology (C++ function) stitched_morphology::segments (C++ function) stitched_morphology::stitch (C++ function) stitched_morphology::stitched_morphology (C++ function), [1] string generic swc_data (C++ class) swc_data::metadata (C++ member) swc_data::records (C++ member) swc_record (C++ class) swc_record::id (C++ member) swc_record::parent_id (C++ member) swc_record::r (C++ member) swc_record::tag (C++ member) swc_record::x (C++ member) swc_record::y (C++ member) swc_record::z (C++ member) synapse (built-in class) synapse() (synapse method) synapse::synapse (C++ function), [1]

T

t (arbor.trace attribute) t_ref (arbor.lif_cell attribute) tag generic tag (arbor.cell_local_label attribute) (arbor.segment attribute) tag_roots (C++ function) tag_roots() (arbor.segment_tree method) target (arbor.event_generator attribute) (arbor.lif_cell attribute) tau_m (arbor.lif_cell attribute) temperature (arbor.cable_cell_global_properties property) terminal

threads (arbor.context attribute) (arbor.proc_allocation attribute) threshold (arbor.threshold_detector attribute) threshold detector threshold_detector (class in arbor) times (arbor.explicit_schedule attribute) trace (class in arbor) traces() (arbor.single_cell_model method) translate() (arbor.isometry static method) tstart (arbor.poisson_schedule attribute) (arbor.regular_schedule attribute) tstop (arbor.poisson_schedule attribute) (arbor.regular_schedule attribute)

U

units (mechanism_field attribute)

univalent (arbor.selection_policy attribute)

V

v (arbor.trace attribute) V_m (arbor.lif_cell attribute) V_th (arbor.lif_cell attribute)

values (mechanism attribute) variable (arbor.trace attribute) vector probe

W

weight (arbor.connection attribute) (arbor.event_generator attribute) (arbor.gap_junction_connection attribute) write_component (C++ function), [1], [2], [3], [4]

write_component() (in module arbor) write_ext_con (ion_dependency attribute) write_int_con (ion_dependency attribute) write_rev_pot (ion_dependency attribute)

X

x (arbor.mpoint attribute)

Y

y (arbor.mpoint attribute)

Z

z (arbor.mpoint attribute)